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Species belonging to selected taxon:
Glycine max
ABOUT THIS RECORD
ID:
MNEST040438
species:
Glycine max
miRNA family:
MIR164
source:
miRBase, original name:
gma-MIR164
(
MI0007209
)
Taxonomy by NCBI:
Glycine max
Glycine
Phaseoleae
Papilionoideae
Fabaceae
Fabales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGGAGAAGCAGGGCACGTGCA
miRNA*
CACGTGCTCCCCTTCTCCAAC
mismatches:
2
bulges:
0
View larger
pre-miRNA
AGCTCCTTGT
TGGAGAAGCAGGGCACGTGCA
AGTCTCTTGGATCTCAAATGCCACTGAACCCTTTG
CACGTGCTCCCCTTCTCCAAC
ACGGGTTT
dot-bracket secondary structure
(((.((.(((
((((((((..(((((((((((
((..((.(((..........)))..))....))))
)))))))))..))))))))))
).))))).
SIMILARITIES
miRBase
tcc-MIR164a
:
0.00000000002
PMRD
gma-miR164
:
5e-49
microPC
miR164
:
0.00002
UniProt
no hits
RFAM
MIR164: 7e-33
Identical with:
gma-miR164
from PMRD (
MNEST048547
)
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction:
true miRNA
additional data
degradome data
download this record
evidence:
454, Northern
deep sequencing data evidence
references
[
1
] Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O,
BMC Genomics. 9:160(2008).
,
"Novel and nodulation-regulated microRNAs in soybean roots"